UNIX SHELL PROMPT # FULLCMD=/opt/ASPLv1.00/shared/mutant~run.aspl -wsname DNASEQ1 -groupingclass DNASEQUENCE -nostrictld ASPL:1 > dm 3ABOUT THIS COMMAND: set display mode to 33:7:45 root@vienna /tmp/pacomp aspl:1 > dm 3 DISPLAY MODE SET TO 3 ASPL:2 > v sortedABOUT THIS COMMAND: print the symbol table3:7:45 root@vienna /tmp/pacomp aspl:2 > v sorted VARIABLES TYPE 1 man1 ggfunc (1)root ggdnaseqS(creatures,creature1,minlength,300,maxlength,400) creature1 (#103/1) man2 ggfunc (1)root ggdnaseqS(creatures,creature2,minlength,300,maxlength,400) creature2 (#122/1) man3@1 ggfunc (1)root ggdnaseqS(creatures,creature3,minlength,300,maxlength,400) creature3 (#120/1) man3@2 ggfunc (2)root ggdnaseqS(creatures,creature3,minlength,300,maxlength,400) creature3 (#120/1) man3@3 ggfunc (3)root ggdnaseqS(creatures,creature3,minlength,300,maxlength,400) creature3 (#120/1) man3 ggfunc (4)root ggdnaseqS(creatures,creature3,minlength,300,maxlength,400) creature3 (#120/1) ASPL:3 > ggAlignDnaSeq(v1,man3,v2,man3@1,fragsize,3)ABOUT THIS COMMAND: call the GG-function ggAlignDnaSeq() to show the alignment of the mutant man33:7:45 root@vienna /tmp/pacomp aspl:3 > ggAlignDnaSeq(v1,man3,v2,man3@1,fragsize,3) *** COLOR COMPARISON SCHEME // sequence similarity alignment *** matchcolor: ███ 117 97.50% seq1color: ███< 0 0.00% seq2color: ███> 0 0.00% misscolor: ███! 3 2.50% AGC GAA GCT ACC TAC TAA ATC TCA GAA CAC GAG GTG TAA CAG AGT GGG AAA GGA TCA AGA ! AGC GAA GCT ACC TCC TAA ATC TCA GAA CAC GAG GTG TAA CAG AGT GGG AAA GGA TCA AGA -- CCG TTG ACT CAC GAT ACA TGG AGC TAC TAA GGC CTT CTG CAT AGG CAA CAT GGC ATC ATA ! CCG TTG ACT CAC GAT ACA TGG AGC TAC TAA GGC CTT CTG CAT AGG CAA CAT GGC ATC ATG -- TGT CGA CGA AGA CAC CGT CGG ATT GTG GAA TCC AAG GTA GTA ACG TAA ACT AAG GAT TGT TGT CGA CGA AGA CAC CGT CGG ATT GTG GAA TCC AAG GTA GTA ACG TAA ACT AAG GAT TGT -- ACC CAG ACT TGG GAT CCC AAT ACG GAT CGG TTT GGG ACA GCA TCG CAG TGA TGC CCG GGA ! ACC CAG ACT TGG GAT CCC AAT ACG GAC CGG TTT GGG ACA GCA TCG CAG TGA TGC CCG GGA -- CAT CTC TGG AGC GTG AGA ACT GTG AAG ATT CCA GGT TCA GTC AAG ACC GAG TAG CCA TGC CAT CTC TGG AGC GTG AGA ACT GTG AAG ATT CCA GGT TCA GTC AAG ACC GAG TAG CCA TGC -- GGG TTT GAC CCT CAA GAT CAT ACG CTG TTT GTA ATA GGA GAT CTT GCT TGC TTC ACG CGA GGG TTT GAC CCT CAA GAT CAT ACG CTG TTT GTA ATA GGA GAT CTT GCT TGC TTC ACG CGA -- AGC GAA GCT ACC TAC TAA ATC TCA GAA CAC GAG GTG TAA CAG AGT GGG AAA GGA TCA AGA CCG TTG ACT CAC GAT ACA TGG AGC TAC TAA GGC CTT CTG CAT AGG CAA CAT GGC ATC ATA TGT CGA CGA AGA CAC CGT CGG ATT GTG GAA TCC AAG GTA GTA ACG TAA ACT AAG GAT TGT ACC CAG ACT TGG GAT CCC AAT ACG GAT CGG TTT GGG ACA GCA TCG CAG TGA TGC CCG GGA CAT CTC TGG AGC GTG AGA ACT GTG AAG ATT CCA GGT TCA GTC AAG ACC GAG TAG CCA TGC GGG TTT GAC CCT CAA GAT CAT ACG CTG TTT GTA ATA GGA GAT CTT GCT TGC TTC ACG CGA AGC GAA GCT ACC TCC TAA ATC TCA GAA CAC GAG GTG TAA CAG AGT GGG AAA GGA TCA AGA CCG TTG ACT CAC GAT ACA TGG AGC TAC TAA GGC CTT CTG CAT AGG CAA CAT GGC ATC ATG TGT CGA CGA AGA CAC CGT CGG ATT GTG GAA TCC AAG GTA GTA ACG TAA ACT AAG GAT TGT ACC CAG ACT TGG GAT CCC AAT ACG GAC CGG TTT GGG ACA GCA TCG CAG TGA TGC CCG GGA CAT CTC TGG AGC GTG AGA ACT GTG AAG ATT CCA GGT TCA GTC AAG ACC GAG TAG CCA TGC GGG TTT GAC CCT CAA GAT CAT ACG CTG TTT GTA ATA GGA GAT CTT GCT TGC TTC ACG CGA WRITING DNAs TO FILE: /root/.aspl/tmp/foo GG FUNCTION TO SHOW DNA ALIGNMENT DONE PROCESSING ggAlignDnaSeq(v1,man3,v2,man3@1,fragsize,3) -- -1-1-1-1-1-1